| Family | Genus | Species | References |
|---|---|---|---|
| Bacterial Keratitis | |||
| Acetobacteraceae | Roseomonas | - | [25] |
| Actinomycetaceae | Actinomyces | bovis | [27, 28] |
| israelii | |||
| Aerococcaceae | Abiotrophia | defectiva | [31] |
| Aerococcus | - | [32, 33] | |
| viridans | |||
| Aeromonadaceae | Aeromonas | - | [15, 41, 42] |
| hydrophilia | |||
| Alcaligenaceae | Achromobacter | - | [33, 42, 51, 52] |
| denitrificans | |||
| xylosoxidans | |||
| Alcaligenes | faecalis | [12] | |
| Bacillaceae | Bacillus | cefilius | [60-64] |
| cereus | |||
| circulans | |||
| coagulans | |||
| firmus | |||
| licheniformis | |||
| megaterium | |||
| polymyxa | |||
| subtilis | |||
| Bacteroidaceae | Bacteroides | fragilis | [68] |
| Bartonellaceae | Bartonella | henselae | [87] |
| Brevibacteriaceae | Brevibacterium | - | [12] |
| Brucellaceae | Ochrobactrum | anthropi | [93] |
| Pasteurella | canis | [49, 94] | |
| multocida | |||
| Burkholderiaceae | Burkholderia | ambifaria | [47, 96, 97] |
| cepacia | |||
| gladioli | |||
| Cardiobacteriaceae | Suttonella | indologenes | [34] |
| Carnobacteriaceae | Dolosigranulum | pigrum | [101] |
| Caulobacteraceae | Brevundimonas | diminuta | [108] |
| Clostridiaceae | Clostridium | - | [60, 110] |
| perfringens | |||
| Peptostreptococcus | anaerobius | [68, 111] | |
| micros | |||
| Sarcina | - | [112] | |
| Comamonadaceae | Delftia1 | acidovorans | [55, 98] |
| Corynebacteriaceae | Corynebacterium | accolens | [15, 44, 62, 105, 115-121] |
| bovis | |||
| diptheriae | |||
| hofmannii | |||
| macginleyi | |||
| matruchotii | |||
| minutissimum | |||
| propinquum | |||
| pseudodiphtheriticum | |||
| pyogenes | |||
| striatum | |||
| urealyticum | |||
| ureicelerivorans | |||
| xerosis | |||
| Arcanobacterium | haemolyticum | [117] | |
| Enterobacteriaceae | Citrobacter | diversus | [43, 105, 122, 123] |
| koseri | |||
| freundii | |||
| Enterobacter | aerogenes | [34, 61, 123, 146] | |
| cloacae | |||
| gergoviae | |||
| Escherichia | coli | [52, 124] | |
| Hafnia | alvei | [125] | |
| Klebsiella | ornithinolytica | [105, 117, 126, 127, 146] | |
| oxygenate | |||
| oxytoca | |||
| ozaenae | |||
| pneumoniae | |||
| Morganella | morganii | [368] | |
| Pantoea | - | [65, 129] | |
| agglomerans | |||
| Proteus | - | [52, 126, 130, 368] | |
| mirabilis | |||
| rettgeri | |||
| vulgaris | |||
| Providencia | - | [33, 104, 131-133] | |
| alcalifaciens | |||
| rettgeri | |||
| stuartii | |||
| Raoultella | - | [33, 134] | |
| ornithinolytica | |||
| Salmonella | - | [102] | |
| Serratia | liguefaciens | [52, 135] | |
| marcescens | |||
| Shigella | flexneri | [52, 136] | |
| sonnei | |||
| Enterococcaceae | Enterococcus | faecalis | [33, 39, 138] |
| faecium | |||
| Eubacteriaceae | Eubacterium | aerofaciens | [143] |
| Flavobacteriaceae | Capnocytophaga | - | [147-151] |
| canimorsus | |||
| cynodegmi | |||
| ochracea | |||
| sputigena | |||
| Chryseobacterium | - | [152-154] | |
| indologenes | |||
| Elizabethkingia | meningoseptica | [34, 155] | |
| Flavobacterium | - | [52] | |
| Fusobacteriaceae | Fusobacterium | - | [157] |
| Intrasporangiaceae | Ornithinimicrobium | pekingense | [160] |
| Lactobacillaceae | Lactobacillus | - | [162] |
| Leuconostocaceae | Leuconostoc | mesenteroides | [10] |
| Listeriaceae | Listeria | monocytogenes | [26] |
| Microbacteriaceae | Microbacterium | - | [29, 30] |
| oxydans | |||
| Micrococcus | - | [10, 30, 38, 39] | |
| luteus | |||
| Micrococcaceae | tetragenus | ||
| Kocuria | koreensis | [10, 34-37] | |
| kristinae | |||
| palustris | |||
| rosea | |||
| varians | |||
| Rothia | dentocariosa | [35, 40] | |
| mucilaginosa | |||
| Moraxellaceae | Acinetobacter | baumannii | [43-48] |
| calcoaceticus | |||
| calcoaceticus var. antitratus | |||
| haemolyticus | |||
| lwoffi | |||
| junii | |||
| schindleri | |||
| Moraxella | catarrhalis | [30, 49, 50] | |
| lacunata | |||
| nonliquefaciens | |||
| Mycobacteriaceae | Mycobacterium | abscessus | [47, 53-59] |
| asiaticum | |||
| aurum | |||
| avium | |||
| chelonae | |||
| flavescens | |||
| fotuitum | |||
| gordonae | |||
| intracellulare | |||
| marinum | |||
| massiliense | |||
| mucogenicum | |||
| nonchromogenicum | |||
| szulgai | |||
| terrae | |||
| triviale | |||
| Neisseriaceae | Eikenella | corrodens | [51] |
| Kingella | denitrificans | [51, 67] | |
| kingae | |||
| Neisseria | gonorrhoea | [13, 65, 66] | |
| meningitides | |||
| mucosa | |||
| Nocardiaceae | Nocardia | abscessus | [44, 69-76] |
| actinomycetes | |||
| amamiensis | |||
| araoensis | |||
| arthritidis | |||
| asiatica | |||
| asteroides | |||
| beijingensis | |||
| blacklockiae | |||
| brasiliensis | |||
| carnea | |||
| caviae | |||
| cyriacigeorgica | |||
| Nocardia | elegans | [237, 291-298] | |
| farcinica | |||
| ignorata | |||
| levis | |||
| neocaledoniensis | |||
| nova | |||
| otitidiscaviarum | |||
| pneumoniae | |||
| pseudobrasiliensis | |||
| puris | |||
| rhamnosiphila | |||
| thailandica | |||
| transvalensis | |||
| wallacei | |||
| Rhodococcus | equi | [77] | |
| Pasteurellaceae | Aggregatibacter | actinomycetemcomitans | [88, 89] |
| aphrophilus | |||
| Haemophilus | aegyticus | [41, 44, 46, 90, 91] | |
| haemoglobinophilus | |||
| influenza | |||
| parainfluenza | |||
| Peptococcaceae | Peptococcus | prevotii | [92] |
| Porphyromonadaceae | Parabacteroides | distasonis | [95] |
| Propionibacteriaceae | Propionibacterium | - | [1, 68, 98, 99] |
| acnes | |||
| granulosum | |||
| Prevotellaceae | Prevotella | - | [68, 100] |
| intermedia | |||
| melaninogenica | |||
| Pseudomonadaceae | Azotobacter | beijerinckii | [107] |
| chroococcum | |||
| paspali | |||
| vinelandii | |||
| Pseudomonas | acidovorans | [30, 33, 38, 52, 102-106] | |
| aeruginosa | |||
| fluorescens | |||
| luteola | |||
| mesophilic | |||
| oryzihabitans | |||
| putida | |||
| pyocyaneus | |||
| stutzeri | |||
| Rhizobiaceae | Rhizobium | radiobacter | [109] |
| Rhodobacteraceae | Paracoccus | yeei | [113] |
| Rickettsiaceae | Rickettsia | conorii | [114] |
| Sphingobacteriaceae | Sphingobacterium | spiritivorum | [30] |
| Spirochaetaceae | Borrelia | burgdorferi | [369] |
| Treponema | pallidum | [137] | |
| Gemella | - | [33, 38, 370] | |
| haemolysans | |||
| morbillorum | |||
| Staphylococcaceae | Staphylococcus | albus | [10, 15, 23, 34, 39, 43, 46, 52, 60, 139-142] |
| aureus | |||
| auricularis | |||
| capitis | |||
| caprae | |||
| cohnii | |||
| epidermidis | |||
| haemolyticus | |||
| hominis | |||
| hyicus | |||
| Staphylococcaceae | Staphylococcus | intermedius | [10, 15, 23, 34, 39, 43, 46, 52, 60, 139-142] |
| lentus | |||
| lugdunensis | |||
| MRSA | |||
| pasteuri | |||
| saprophyticus | |||
| simulans | |||
| warneri | |||
| xylosus | |||
| Staphylococcaceae | Staphylococcus | acidominimus | [33, 41, 46, 47, 49, 60, 64, 65, 117, 126, 144-146] |
| agalactiae | |||
| anginosus | |||
| dysgalactiae | |||
| intermedius | |||
| mitis | |||
| morbillorum | |||
| oralis | |||
| parasanguis | |||
| pneumoniae | |||
| pyogenes | |||
| salivarius | |||
| sanguinis | |||
| viridans | |||
| Streptomycetaceae | Streptomyces | - | [131, 156] |
| thermocarboxydus | |||
| Tsukamurellaceae | Tsukamurella | hongkongensis | [158, 159] |
| spumae | |||
| tyrosinosolvens | |||
| Vibrionaceae | Vibrio | vulnificus | [43, 161] |
| parahaemolyticus | |||
| Xanthomonadaceae | Stenotrophomonas | maltophilia | [46, 98] |
| Xanthomonas | - | [163] | |
| Yersiniaceae | Yersinia | - | [43, 164] |
| pseudotuberculosis | |||